Questions tagged [r]
R is a free, open-source programming language and software environment for statistical computing, bioinformatics, and graphics.
352
questions
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Unable to find R in ubuntu while r-base is correctly installed
After upgrading to Ubuntu 22.04.2 LTS , I decided to update my version of R to 4.3. After encountering several difficulties, I completely removed R (including removing all system files related to R, ...
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0
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0
answers
405
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How to re-install R 4.2.0
I have been running R version 4.2.0 on Ubuntu 20.04.4 LTS. Recently R was updated to 4.3.0 on my system, but for my current work I need to return to version 4.2.0. I uninstalled R using the ...
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0
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0
answers
60
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Unable to install Rstudio after reinstalling R
Rstudio showed me a newer version, so I downloaded and installed it, but it refused to start afterwards, I removed and reinstalled R and Rstudio, the error persists. This is the error it gives me:
## ...
- 101
0
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0
answers
382
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Trying to run R gave me "Fatal error: cannot create 'R_TempDir' "
I checked partition for /tmp and it seems to be full.
>> df /tmp
Filesystem 1K-blocks Used Available Use% Mounted on
/dev/sda2 23854928 23579092 0 100% /
Checking all the ...
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1
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0
answers
52
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Installing torch: undefined symbol for liblantern.so
I try to install the R-Version of pytorch CPU, to avoid using reticulate as a workaround.
I simply used install.packages("torch") which successfully finished.
When using library(torch) after ...
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1
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0
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33
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Install R failed in Ubuntu 20.04.5 LTS [duplicate]
Please can someone provide assistance with this issue
sudo apt install r-base-core
Reading package lists... Done
Building dependency tree
Reading state information... Done
...
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2
answers
678
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Installing R on Ubuntu
I'm trying to install R on my Ubuntu 22.10, by following this article
However, when installing the repository, and then updating, I receive the message.
E: The repository 'https://cloud.r-project.org/...
1
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1
answer
681
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Installing packages of R in UBUNTU
i have an R script that looks like this:
install.packages("R.utils")
library("R.utils")
install.packages("vcfR")
library("vcfR")
install.packages("stringr&...
1
vote
1
answer
1k
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Trying to install rpy2 results in "ERROR: Command errored out with exit status 1"
I'm trying to install rpy2 in Ubuntu for Windows with the command pip install rpy2, which yields the following error message:
ERROR: Command errored out with exit status 1:
command: /usr/bin/python3 -...
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0
votes
0
answers
256
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Can't install R 4.0.0 version on Linux ( always R 4.2.1 installed )
I have a Ubuntu 22.04 system.
I used advice from here to install version of R 4.0.0 but I always get 4.2.1 the newest one.
Problem installing R 4.0 on Ubuntu 18.04
One thing I changed is "bionic&...
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0
votes
1
answer
54
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R console issue under Ubuntu 22.04
I recently upgraded to Ubuntu 22.04. The R console seems not to be working correctly after my upgrade. The problem is that when I paste several lines of code into the R console, only a few lines of ...
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3
votes
1
answer
627
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Upgrading R from 4.1.2 to 4.2.1 under Ubuntu aarch64/arm64 22.04 LTS have unmet dependencies
I am using aarch64 Ubuntu 22.04.1 LTS (jammy), and the default R for the system
is R version 4.1.2 (2021-11-01) -- "Bird Hippie". I tried to upgrade R to the
latest version of 4.2.1 by ...
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0
votes
1
answer
55
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problem installing R after updating to ubuntu 22:04
I spent whole day without success.I can't get to work. Here is the problem
sudo apt install r-base-core
Reading package lists... Done
Building dependency tree... Done
Reading state information... Done
...
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0
votes
1
answer
322
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Trying to install RStudio on a Ubuntu 22.04 Raspberry Pi 4 2GB memory
I am trying to install RStudio to complete some basic non-CPU intensive tasks.
I download the .deb file and run the following:
matt@matt-Rpi-2GB:~/Downloads$ sudo gdebi rstudio-2022.07.1-554-amd64.deb ...
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2
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1k
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Installing base R version 4.0.5 on ubuntu
I currently have R 4.2.1, but I am trying to install 4.0.5
4.2.1 can be removed, but I can't seem to specify R 4.0.5 when installing.
Any input is appreciated.
This is what I attempted so far:
...
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0
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1
answer
598
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How to overcome 'fatal error: png.h' when installing the 'distill' package in Rstudio - Ubuntu 22.04
After successfully installing R and Rstudio on my computer. I installed the 'distill' package as follows in Rstudio:
> install.packages("distill").
After several minutes it ended with the ...
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0
votes
1
answer
2k
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Installing R on Ubuntu 22.04
I have just updated my device to Ubuntu 22.04 and I wanted to install R following this readme: https://cran.r-project.org/bin/linux/ubuntu/fullREADME.html
This worked fine, however, now I get an error ...
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0
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1
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192
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R not working after installing Citrix Receiver on Ubuntu 22.04
My R installation is no longer working after installing Citrix Receiver on Ubuntu 22.04.
The Citrix installation comes from here
After installing Citrix, I can type R into my terminal, but nothing ...
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1
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1
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589
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R not running on Ubuntu 22.04
I installed R 4.2.1 on by new Ubuntu 22.04 installation (using ZFS filesystem). The installation worked without error, and I can confirm that R is indeed installed with R --version which outputs the ...
- 205
1
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0
answers
994
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Upgrading R from 4.2.0 to 4.2.1 on 18.04.6 LTS via recommended PPA states that 4.2.0 is latest
I am trying to update R from 4.2.0 to 4.2.1 (r-project.org) according to the recommendations for installing on ubuntu. I have already added the ppa in the past, and used it to install r-base-dev on ...
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0
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0
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443
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Error installing rgdal library in R :
I am struggling with terra installation. To be complete, I tried every hints I have found in google, but nothing change this error message. I need rgdal as 'terra' dependency if I understand well, but ...
0
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0
answers
49
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can not dump code in terminal anymore
I do not use an IDE when I program (eg in R or python) but just use a text editor and copy code and then dump it in a terminal (guake - but I have the same issue with the stock terminal). This used to ...
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0
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1k
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R installation on Ubuntu, how to fix this error message?
I'm quite new to Unix systems and I just can't understand why I'm having this problem during the installation of R on Ubuntu 20.04 focal fossa.
I have installed R using the following procedure:
...
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1
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0
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211
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Can't install RStudio Server on Ubuntu 20.04.4 LTS
I am using Ubuntu 20.04.4 LTS
:~$lsb_release -a
No LSB modules are available.
Distributor ID: Ubuntu
Description: Ubuntu 20.04.4 LTS
Release: 20.04
Codename: focal
I tried to download the ...
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-1
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1
answer
1k
views
Compile gcc 7.4 failed for ubuntu-22.04
I tried to compile gcc 7.4 for my ubuntu-22.04 so that I could use the glmnet for my R package.
I tried everything from the internet and it did not work.
The error I have is :
#Error1 ...
2
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4
answers
4k
views
How to solve library dependancy for Rstudio in Ubuntu 22.04
I have just installed ubuntu 22.04. I could install R with sudo apt -y install r-base gdebi-core:
$ R
R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for ...
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0
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784
views
Following R error happened : caught bus error, address 0x7f..., cause non-existent physical address
Test environment :
uname -r
5.4.0-107-generic
lsb_release -a
No LSB modules are available.
Distributor ID: Ubuntu
Description: Ubuntu 18.04.5 LTS
Release: 18.04
Codename: bionic
I run the R ...
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3
votes
1
answer
719
views
Overcoming "undefined symbol: _gfortran_runtime_error_at" during R package, "glmnet" installation in WSL2 Focal
I've been trying to install a R package, glmnet and having a installation issue. Here is an error output after I fired install.packages("glmnet") ;
/usr/bin/clang++ -std=gnu++14 -shared -L/...
- 191
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0
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148
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Tiny R plot window
Producing R plots in a new Dell XPS-13-9310 running Ubuntu 20.04 opens tiny windows. Here is a screenshot of the phenomenon:
Resizing the window will not increase the size of axis labels ...
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0
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104
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R processes stuck in memory from last Jupyter in VS Code session
I have noticed that I often will have multiple R processes still running, and occupying a significant amount of RAM, even if I closed all applications that I use for R.
For the most part I use VS Code ...
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1
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1
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244
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How to install R studio on xfce remote desktop?
I am currently handling my remote server through RDP with an Xfce desktop interface. It has an ubuntu 18.04 version. I want to use it for implementing R and I am quite familiar with R-Studio. Can I ...
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2
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567
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Can a virus be installed just by downloading a file?
Let´s assume that I programmatically download a malicious file, e.g. using wget, and try to import in e.g. R or Python as a text file. If it fails, I delete it using rm. There is any chance that my ...
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3
answers
3k
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How to install R 4.0 on Ubuntu 18.04 when 'r-base' has no installation candidate
I was following this instruction for installing R 4.0 in Ubuntu 18.04
$ sudo apt remove r-base
$ sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9
$...
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3
answers
4k
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Problems installing latest version of R in ubuntu 20.04 LTS
I've been trying to install R 4.1 on ubuntu and each time I get the same error
The following packages have unmet dependencies:
r-base : Depends: r-base-core (>= 4.1.2-1.2004.0) but 3.6.3-2 is to ...
4
votes
1
answer
9k
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how can I update R to version 4 on ubuntu
I'm using Ubuntu 20.04.3 LTS. I'm using R version 3.6.3. Some packages is not in there. Therefore I need R version 4. or higher than 4.
I tried those things:
sudo -H gedit /etc/apt/sources.list
then ...
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votes
0
answers
586
views
Using Sublime Text to send code to terminal
I have just recently switched from Mac OS to Ubuntu and I am missing a specific feature (not Mac OS related) that I couldn't find anywhere.
I want to use Sublime Text 3 as a general code editor and ...
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0
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1
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792
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Can't Install R 4.X on Ubuntu 20.04 [duplicate]
I trying to update R on my Ubuntu 20.04 (new updated from 16.04).
So I delete the previous version of R by :
sudo apt-get purge r-base* r-recommended r-cran-*
sudo apt autoremove
After, I update ...
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0
answers
1k
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Restoring the default repositories in WSL and reinstalling R
I have made a similar question but it was closed here: Difficulties on trying to (re)install R
As I work in WSL I believe my situation is a bit specific.
After uninstalling R and going through some ...
4
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0
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106
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Difficulties on trying to (re)install R [duplicate]
I am trying to (re)install R in my ubuntu WSL. I already had done with
sudo apt install r-base-core
But, then, later I tried to change to R 4.0 with some compressed version. Eventually, the old R 3 ...
1
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1
answer
323
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Is it possible to prevent R package conflicts while upgrading Ubuntu 16.04 LTS with R from CRAN to Ubuntu 18.04 LTS?
I have fully updated Ubuntu 16.04.7 LTS amd64 which was configured for RMarkdown/bookdown, LaTeX publishing using the following commands:
sudo apt-get install apt-transport-https
cat <<EOF | ...
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2
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1
answer
458
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Successfully download R and Rstudio on ubuntu 18.04, but can't open it,enven on web(8787)
I want to use Rstudio on cloud server, and I successfully download R and Rstudio on ubuntu 18.04, but can't open it. I think it is because of the wrong environment variable. And I don't know what to ...
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1
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1
answer
2k
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Error when installing RStudio in Anaconda: `/opt/anaconda3/lib/R/bin/exec/R: error while loading shared libraries: libreadline.so.6:
I am currently trying install Anacondas RStudio version. Already I have R installed from the official CRAN repositories through apt package manager and the newest version of RStudio. My current ...
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0
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91
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Is the latest version of rstan 2.26.2 avaiable for Ubuntu 20.04 LT? [duplicate]
Is the latest version of rstan (2.26.2) available yet on Ubuntu 20.04 LT? If not yet, is there an estimate of when it will be available?
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2
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398
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How to manage number of cores used on my institution's server
I'm using a remote server where I'm not supposed to request more than 24 of the 100 cores.
I'm running a couple of R scripts which seem to be using too many...
How can I tell, in htop, how many cores ...
2
votes
1
answer
3k
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dependency ‘Cairo’ is not available for package ‘ComplexHeatmap’ on Ubuntu 20.04 LTS
Please what could be a reason for this error? I am trying to install the R package ComplexHeatmap but I keep getting the error message that the the dependency Cairo is not available. I have tried to ...
- 141
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1
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1k
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Cannot install any R packages after installing Ubuntu 20.04
Please are there any hints on why I am not able to install any R packages? I recently installed the Ubuntu 20.04 LTS OS as well as R and R studio. I am however not able to install any packages in R. I ...
- 141
0
votes
0
answers
69
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How can I repeat a potentially failed update of Ubuntu 18?
I am new to Ubuntu but I have a good coding backgroud. I tried to update my Ubuntu 18 machine to the latest, Ubuntu 20.04. I followed a tutorial I found online. But I think the update was not ...
- 141
1
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1
answer
409
views
Issue upgrading R 4.05 to 4.1 in Focal 20.04 on AWS EC2
I am trying to upgrade R 4.0.5 to R 4.1 with an update instruction by Johannes Ranke on cloud-R and I did as follows;
sudo nano /etc/apt/sources.list
and added;
deb http://cloud.r-project.org/bin/...
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2
votes
2
answers
1k
views
Installing R and RStudio in Lubuntu 20.04
I wanted to install R with Rstudio to start learning, but I found many problems in the way, I'll explain as much as i can below.
So I went to the CRAN Project website https://cran.r-project.org/ and ...
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3
votes
1
answer
5k
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Can´t install R 4.1 on Ubuntu Server 20.04 (Raspberry Pi)
i have a fresh & clean install of Ubuntu Server 20.04 64bit running on my new raspberry pi 4.
The first thing i did was creating a new user with sudo privileges. This was followed by
sudo update ...
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