Questions tagged [r]
R is a free, open-source programming language and software environment for statistical computing, bioinformatics, and graphics.
332
questions
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Can't install RStudio Server on Ubuntu 20.04.4 LTS
I am using Ubuntu 20.04.4 LTS
:~$lsb_release -a
No LSB modules are available.
Distributor ID: Ubuntu
Description: Ubuntu 20.04.4 LTS
Release: 20.04
Codename: focal
I tried to download the ...
- 103
-1
votes
1
answer
121
views
Compile gcc 7.4 failed for ubuntu-22.04
I tried to compile gcc 7.4 for my ubuntu-22.04 so that I could use the glmnet for my R package.
I tried everything from the internet and it did not work.
The error I have is :
#Error1 ...
1
vote
4
answers
855
views
How to solve library dependancy for Rstudio in Ubuntu 22.04
I have just installed ubuntu 22.04. I could install R with sudo apt -y install r-base gdebi-core:
$ R
R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for ...
- 381
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0
answers
16
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FAILED to install circlize" when install " java -jar vdjtools-1.2.1.jar Rinstall"
Hello,
I tried to install vdjtools https://github.com/mikessh/vdjtools in my ubuntu 18.04.5. My R version is 4.1.3.
It said: "FAILED to install circlize". I only find "-fstack-protector-...
- 1
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votes
0
answers
14
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renew password? [duplicate]
I installed Ubuntu from a disc, several years ago. I did not establish a password at that time. Now I would like to use the program, and am asked for a password. I have tried to find a way to renew ...
0
votes
0
answers
50
views
Following R error happened : caught bus error, address 0x7f..., cause non-existent physical address
Test environment :
uname -r
5.4.0-107-generic
lsb_release -a
No LSB modules are available.
Distributor ID: Ubuntu
Description: Ubuntu 18.04.5 LTS
Release: 18.04
Codename: bionic
I run the R ...
- 101
3
votes
1
answer
142
views
Overcoming "undefined symbol: _gfortran_runtime_error_at" during R package, "glmnet" installation in WSL2 Focal
I've been trying to install a R package, glmnet and having a installation issue. Here is an error output after I fired install.packages("glmnet") ;
/usr/bin/clang++ -std=gnu++14 -shared -L/...
- 191
0
votes
0
answers
42
views
Tiny R plot window
Producing R plots in a new Dell XPS-13-9310 running Ubuntu 20.04 opens tiny windows. Here is a screenshot of the phenomenon:
Resizing the window will not increase the size of axis labels ...
- 191
1
vote
0
answers
40
views
R processes stuck in memory from last Jupyter in VS Code session
I have noticed that I often will have multiple R processes still running, and occupying a significant amount of RAM, even if I closed all applications that I use for R.
For the most part I use VS Code ...
- 425
1
vote
1
answer
68
views
How to install R studio on xfce remote desktop?
I am currently handling my remote server through RDP with an Xfce desktop interface. It has an ubuntu 18.04 version. I want to use it for implementing R and I am quite familiar with R-Studio. Can I ...
- 153
0
votes
2
answers
113
views
Can a virus be installed just by downloading a file?
Let´s assume that I programmatically download a malicious file, e.g. using wget, and try to import in e.g. R or Python as a text file. If it fails, I delete it using rm. There is any chance that my ...
- 145
3
votes
3
answers
568
views
How to install R 4.0 on Ubuntu 18.04 when 'r-base' has no installation candidate
I was following this instruction for installing R 4.0 in Ubuntu 18.04
$ sudo apt remove r-base
$ sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9
$...
- 162
0
votes
1
answer
724
views
Problems installing latest version of R in ubuntu 20.04 LTS
I've been trying to install R 4.1 on ubuntu and each time I get the same error
The following packages have unmet dependencies:
r-base : Depends: r-base-core (>= 4.1.2-1.2004.0) but 3.6.3-2 is to ...
1
vote
1
answer
1k
views
how can I update R to version 4 on ubuntu
I'm using Ubuntu 20.04.3 LTS. I'm using R version 3.6.3. Some packages is not in there. Therefore I need R version 4. or higher than 4.
I tried those things:
sudo -H gedit /etc/apt/sources.list
then ...
- 11
0
votes
0
answers
188
views
Using Sublime Text to send code to terminal
I have just recently switched from Mac OS to Ubuntu and I am missing a specific feature (not Mac OS related) that I couldn't find anywhere.
I want to use Sublime Text 3 as a general code editor and ...
- 101
0
votes
1
answer
174
views
Can't Install R 4.X on Ubuntu 20.04 [duplicate]
I trying to update R on my Ubuntu 20.04 (new updated from 16.04).
So I delete the previous version of R by :
sudo apt-get purge r-base* r-recommended r-cran-*
sudo apt autoremove
After, I update ...
0
votes
0
answers
259
views
Restoring the default repositories in WSL and reinstalling R
I have made a similar question but it was closed here: Difficulties on trying to (re)install R
As I work in WSL I believe my situation is a bit specific.
After uninstalling R and going through some ...
4
votes
0
answers
53
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Difficulties on trying to (re)install R [duplicate]
I am trying to (re)install R in my ubuntu WSL. I already had done with
sudo apt install r-base-core
But, then, later I tried to change to R 4.0 with some compressed version. Eventually, the old R 3 ...
1
vote
1
answer
124
views
Is it possible to prevent R package conflicts while upgrading Ubuntu 16.04 LTS with R from CRAN to Ubuntu 18.04 LTS?
I have fully updated Ubuntu 16.04.7 LTS amd64 which was configured for RMarkdown/bookdown, LaTeX publishing using the following commands:
sudo apt-get install apt-transport-https
cat <<EOF | ...
- 88.8k
2
votes
1
answer
210
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Successfully download R and Rstudio on ubuntu 18.04, but can't open it,enven on web(8787)
I want to use Rstudio on cloud server, and I successfully download R and Rstudio on ubuntu 18.04, but can't open it. I think it is because of the wrong environment variable. And I don't know what to ...
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1
vote
1
answer
1k
views
Error when installing RStudio in Anaconda: `/opt/anaconda3/lib/R/bin/exec/R: error while loading shared libraries: libreadline.so.6:
I am currently trying install Anacondas RStudio version. Already I have R installed from the official CRAN repositories through apt package manager and the newest version of RStudio. My current ...
- 425
0
votes
0
answers
58
views
Is the latest version of rstan 2.26.2 avaiable for Ubuntu 20.04 LT? [duplicate]
Is the latest version of rstan (2.26.2) available yet on Ubuntu 20.04 LT? If not yet, is there an estimate of when it will be available?
- 499
0
votes
2
answers
105
views
How to manage number of cores used on my institution's server
I'm using a remote server where I'm not supposed to request more than 24 of the 100 cores.
I'm running a couple of R scripts which seem to be using too many...
How can I tell, in htop, how many cores ...
2
votes
1
answer
1k
views
dependency ‘Cairo’ is not available for package ‘ComplexHeatmap’ on Ubuntu 20.04 LTS
Please what could be a reason for this error? I am trying to install the R package ComplexHeatmap but I keep getting the error message that the the dependency Cairo is not available. I have tried to ...
- 141
1
vote
1
answer
721
views
Cannot install any R packages after installing Ubuntu 20.04
Please are there any hints on why I am not able to install any R packages? I recently installed the Ubuntu 20.04 LTS OS as well as R and R studio. I am however not able to install any packages in R. I ...
- 141
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0
answers
36
views
How can I repeat a potentially failed update of Ubuntu 18?
I am new to Ubuntu but I have a good coding backgroud. I tried to update my Ubuntu 18 machine to the latest, Ubuntu 20.04. I followed a tutorial I found online. But I think the update was not ...
- 141
1
vote
1
answer
318
views
Issue upgrading R 4.05 to 4.1 in Focal 20.04 on AWS EC2
I am trying to upgrade R 4.0.5 to R 4.1 with an update instruction by Johannes Ranke on cloud-R and I did as follows;
sudo nano /etc/apt/sources.list
and added;
deb http://cloud.r-project.org/bin/...
- 191
2
votes
1
answer
693
views
Installing R and RStudio in Lubuntu 20.04
I wanted to install R with Rstudio to start learning, but I found many problems in the way, I'll explain as much as i can below.
So I went to the CRAN Project website https://cran.r-project.org/ and ...
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3
votes
1
answer
3k
views
Can´t install R 4.1 on Ubuntu Server 20.04 (Raspberry Pi)
i have a fresh & clean install of Ubuntu Server 20.04 64bit running on my new raspberry pi 4.
The first thing i did was creating a new user with sudo privileges. This was followed by
sudo update ...
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2
votes
1
answer
74
views
Pasted text in interactive R session using Gnome Terminal in 21.04 is always highlighted -
Yesterday I updated to Ubuntu 21.04. This is basically the same issue as this post. I solved the original issue (using this answer) of having the text highlighted when I paste something into the ...
- 79
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0
answers
627
views
How to install older R version on Ubuntu 20.04
R was recently updated to the version 4.1, which meant that some of the crucial packages that I need do not work anymore. How can I install older version such as 4.0.5. I tried these instructions: How ...
- 1
0
votes
1
answer
1k
views
Installing R 4.0.2 on Ubuntu 20.04
I'm trying to install R version 4.0.2 on Ubuntu 20.04 via:
sudo apt-get install r-base=4.0.2 but I get
Reading package lists... Done
Building dependency tree
Reading state information... Done
E:...
4
votes
1
answer
3k
views
How to install specific R version in ubuntu
Good afternoon !
Under ubuntu , i'm trying to install a specific R version . so i downloaded the following .tar file :
https://cran.r-project.org/src/base/R-3/R-3.5.0.tar.gz
After that , i had ...
- 143
1
vote
2
answers
55
views
Installing specific version of R pgmm library fails
I am trying to install a specific version fo the pgmm library in R, and it fails:
> library(fs)
> old_lib <- path_home_r("R/x86_64-pc-linux-gnu-library/old-versions/")
> library(...
- 361
0
votes
0
answers
57
views
R update removes all R packages
I am running Ubuntu 20.04.2 (5.8.0-53-generic) and have R version 4.0.5 (2021-03-31) -- "Shake and Throw" installed.
Today I updated the system with sudo apt update and sudo apt upgrade and ...
- 187
1
vote
1
answer
371
views
Unable to complete pdftools installation Ubuntu 18.04 for R supporting readtext
I read the post How install poppler and was hopeful regarding my own difficulty, but no dice.
I am running R under Anaconda on a Ubuntu 18.04 Precision laptop. I wanted to install readtext (R package) ...
- 131
1
vote
1
answer
385
views
R 4.0 library problem lgfortran
I am trying to install some libraries in my machine with R (r version 4.0).
I tried to run this command :
install.packages("libcoin")
But it failed, here a large part of the output:
* ...
- 121
0
votes
0
answers
57
views
How to import R programming language into IntelliJ Idea?
I'm using Kubuntu 20.10. I have installed Intellij IDEA without any problems; but I can't install R into it. I can install other programming languages such as Kotlin, Java or Python; but not R. And I ...
- 483
2
votes
0
answers
2k
views
How to change the R path?
I have some problems with using R and Rstdio along with my Jupyter notebook and r in my ubuntu 20.04. I first installed R and Rstudio. This version of R was the latest. (4.0.5). Then I installed ...
- 21
1
vote
1
answer
208
views
Mxnet R package compilation
I am interested in using the mxnet library in R programming language. However there is absence of instructions regarding how to compile the R package in Ubuntu. The make rpkg command is not ...
- 23
2
votes
1
answer
397
views
Cannot install R updates because they "requre installation of untrusted packages", can't update expired key either (Ubuntu 16.04 LTS)
I've had this problem for some time. First, I tried to update my software through Software Updater. I succeeded for all packages except the R (open source stat software) packages. I got the following ...
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1
vote
1
answer
1k
views
libreadline.so.7 issue ubuntu 20.04
Updated Ubuntu and I reinstall R and now if I tried to run R on my terminal I am getting below error, I am getting what will be the issue
/usr/local/lib/R/bin/exec/R: error while loading shared ...
1
vote
0
answers
72
views
Error while connecting to RStudio Server
I am trying to install RStudio Server in my ubuntu server (16.04) and whenever i do so, I am seeing the following message:
***sudo gdebi rstudio-server-1.4.1103-amd64.deb***
Traceback (most ...
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1
vote
1
answer
352
views
R not finding anaconda installation
I am attempting to install an R package on my Ubuntu system and have encountered an error. (I do not receive this error when using a PC or Mac)
$ R
> install.packages("leiden")
...
...
- 11
2
votes
0
answers
163
views
Problems with ggpairs()- function
I am running R 4.0.3 within RStudio on my laptop with Ubuntu 20.04. I tried to use the ggpairs() function out of the GGally library and some parts of the plot can't be displayed. The value of the ...
- 21
2
votes
1
answer
427
views
Issue installing R4.0 in AWS Ubuntu focal aarch64
I am trying to install R4.0 package in the arm64 ubuntu server (focal) on th AWS. I followed the install instruction on this web site, https://rtask.thinkr.fr/installation-of-r-4-0-on-ubuntu-20-04-lts-...
- 191
3
votes
3
answers
3k
views
Dependency problems installing libmagick++-dev on Ubuntu 18.04
I am trying to use install splashr, but running into some dependencies issues and nothing seems to work. I know it is more related to misconfiguration in OS than to issues in the package itself, but ...
- 143
0
votes
1
answer
339
views
Unable to install R 4.0 on Ubuntu 18.04
I followed this post here on Ask Ubuntu to install R 4.0, however in the last step
sudo apt install r-base
I get the following error :
Reading package lists... Done
Building dependency tree
...
1
vote
0
answers
47
views
Unable to install R >3.6 version
I am trying to install R >3.6 version on my system, but every time it is giving this error:
$ sudo apt-get install r-base
Reading package lists... Done
Building dependency tree
Reading state ...
- 11
1
vote
1
answer
320
views
How to stop app rstudio loading on localhost:8787
(Tag recommendations welcome, I do not know how to properly categorise or tag my issue)
Ubuntu 18.04.
I have a mystery. When I visit localhost:8787 I am taken to the rstudio login screen:
I do not ...
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