Questions tagged [conda]

This tag should be used for questions regarding the conda package manager.

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conda environment can't find distutils.core after upgrade to 22.04

After upgrading to Ubuntu 22.04, python setup.py fails with: ModuleNotFoundError: No module named 'distutils.core' in response to an attempt to cythonize a .pdx file. Attempts to do anything along ...
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conda update removed conda

I have just updated conda, and I fell into an error from which I could not recover so far. I am copying here the essential lines that illustrate the apparent problem (and below the full output). The ...
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How to start xdg-open shortcut within conda environment (Using app installed with conda as xdg-open app)

I installed QGIS using conda. If I start qgis from the terminal it works well as it has everything it needs to use in the PATH as defined by the conda base environment. However I cannot pin that app ...
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python version (conda -forge)

I am using 18.04 Ubuntu with Anaconda.Recently i have trying to install OpenCV through conda-forge channel in the base environment. I did not install purposely any Python version and did not use any ...
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Conda hangs when installing new Python version

Some of the output of conda search python is: # Name Version Build Channel python 3.9.0 h2a148a8_4_cpython conda-forge ...
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Removing conda from path

echo $PATH [OUT] /home/cmaspi/anaconda3/bin /home/cmaspi/.local/bin /usr/local/sbin /usr/local/bin /usr/sbin /usr/bin /sbin /bin /usr/games /usr/local/games /snap/bin I've already removed anaconda3 ...
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252 views

Fish does not run as conda base by default

I have installed Fish on my Ubuntu, but every time I open my terminal I have to run the bash command to initiate conda base. I hadn't this problem with ZSH in the past. Is there any solution to make ...
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452 views

conda create env using yml file - ResolvePackageNotFound error keeps changing

I am trying to use conda to create an environment through the yml file from this GitHub repository https://github.com/thanard/causal-infogan. The command is conda env create -f tf14.yml and the file ...
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conda env create -f tf14.yml - ResolvePackageNotFound

I am trying to run the code from this repository https://github.com/thanard/causal-infogan. The instructions to install the python environment are as follows Create a python environment and install ...
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3 votes
2 answers
859 views

What am i doing wrong in Conda?

I am a first time user of of Anaconda & Miniconda suite and I have been having problems running code using it. Every time I try to run a python script in Anaconda or miniconda it comes up with ...
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Conda activation [duplicate]

I recently moved miniconda2 to another directory and now I can't activate the conda environment. Please any suggestion to resolve this problem. bash: conda: command not found
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how to prevent OSError: cannot allocate memory in static TLS block in a conda enironment

I am using ubuntu 20.04 and conda 4.8.3. I have installed a package in one of my environments using pip (pip install --force-reinstall --no-cache-dir gmsh-dev) but when I try to import the package in ...
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Why new envonments of anaconda are empty

I am using conda version 4.9.2 in ubuntu 18.04. I firstly create a new environment and then try to install a package but surprisingly this package already exists but there but when I try o import it ...
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frozen solving environment step in installing a package in ubuntu

I am trying to install moose framework in my ubuntu (20.4). It has three main steps: exporting path of miniconda using: export PATH=$HOME/miniconda3/bin:$PATH Configuring Conda to work with conda-...
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I can't install packages with conda, even so anaconda was correctly installed? (Fresh Ubuntu 20.04 LTS Setup)

I wanted to install pandas on my fresh installation of Ubuntu 20.04 LTS (updated it first). What i did: I followed the installation instructions on: https://docs.anaconda.com/anaconda/install/linux/ (...
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1 answer
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Setting up tensorflow-GPU Conda environment with CUDA 11.2 and cuDNN 8.1-8.2 (CUDA 460 Driver

I am trying to create a conda environment for tensorflow-GPU. I have a GeForce RTX 3080, running Ubuntu 21.04 with the CUDA 460 driver installed (secure boot disabled). I tried to install cudatoolkit ...
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conda install -c bioconda simlord | UnsatisfiedError

Following this tutorial and two installation steps, I want to run SimLoRD. On Ubuntu 18.04, using a Python 3.9 venv: conda install -c bioconda simlord UnsatisfiedError Terminal output I have tried ...
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Making changes to Conda environment permanent instead of falling back to the default

I can set my environment to make it house_rank, and it shows on my terminal: house_rank sgilmour14-Ubuntu But after a reboot, it goes back to my standard terminal, and removes house_rank. Is there a ...
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2 votes
1 answer
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Anaconda Navigator gets stuck at loading applications in Ubuntu 20.04 even after updating Anaconda Navigator

I tried opening Anaconda Navigator as root and it got stuck at "loading applications" and gave this error: Traceback (most recent call last): File "/home/karuna63/anaconda3/lib/...
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2 votes
1 answer
5k views

sh: 1: python: not found when execute python script from php

I'm tring to execute a python script call from php with the command below: $output = shell_exec('python /var/www/html/sna/server/userManagement.py '. $user.' '. $pass .' \''.$action.'\' 2>&1'); ...
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Error installing libgfortran3 on Ubuntu 20.04

I'm working on a project where I have to compile the code from another author. He uses very old packages so I'm traying to recreate the enviroment on conda, but I cannot find any good repo for Ubuntu ...
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1k views

Which is the "correct" version of `CUDA` seen by `pytorch`

Which is the "correct" CUDA Version? nvidia-smi says I have cuda version 10.1 conda list tells me cudatoolkit version is 10.2.89 print(torch.cuda.current_device()), I get 10.0.10? (it ...
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Installing Ananconda on Ubuntu 20.04, many erros

Disclaimer: I'm very very new to Linux. Background: I'm having issues installing Anaconda on my Ubuntu 20.04. I am running this off of my USB stick on a PC. I tried downloading the community pycharm ...
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conda : command is not found

$ wget "https://repo.continuum.io/archive/Anaconda2-5.0.1-Linux-x86_64.sh" $ chmod u+x ./Anaconda2-5.0.1-Linux-x86_64.sh $ ./Anaconda2-5.0.1-Linux-x86_64.sh $ bash I ran the above commands ...
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2 votes
1 answer
981 views

Not able to activate conda environment through os.system command in python

I want to activate activate a conda environment before running my python file through os.system command, but unfortunately, I am not able to activate the conda environment. Following is the command I ...
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2 answers
6k views

Anaconda is only available to root

I downloaded the Anaconda3-2020.02-Linux-x86_64.sh from official site and used the command: sudo sh Anaconda3-2020.02-Linux-x86_64.sh To install. By default it installed inside '/root/anaconda3'. ...
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579 views

conda activate newenv returns "powerline-shell: command not found"

I installed Conda using Anaconda3-2019.10-Linux-x86_64.sh. It works fine until today. I was able to run create new virtual env and activate it and then deactivate it as expected. Basically, conda --...
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Error installing anaconda

I am new in Ubuntu bionic beaver. I have been trying to install Anaconda without success. Apparently, the installation happens, all dependencies are in anaconda folder. During the installation, when ...
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1 answer
146 views

Qiime2 conda environment changing the name

I had install qiime2 within a conda environment, but I forget to change the name of the environment, I copied the name of the example in the qiime2 guide. I would like to know if it's possible to ...
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3 votes
2 answers
1k views

Activate conda environment in Ubuntu desktop shortcut

I have a desktop shortcut that has the following Exec line: Exec=conda activate my_env && my_command However, this shortcut doesn't launch. To try to debug this, I ran the same command in a ...
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Ubuntu conda command

I'm using Ubuntu 18.04x64 When I try to open conda navigator with conda --navigator, this error occurs: usage: conda [-h] [-V] command ... conda: error: the following arguments are required: ...
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2 votes
1 answer
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Can I use conda and pip3 interchangeably to install Python packages?

I don't understand why some Python packages are installed using conda and some by using pip3. Are these just different installers from different developers but doing the same thing? Can I use them ...
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-1 votes
1 answer
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Changing conda environment for python commands

I wrote a Python script which uses a package named paraview. I installed this package to my environment. I want that whenever the code is run, the environment must be changed and then the code is run. ...
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Command 'python' not found after creating conda environment

I am running Ubuntu 19.10 on my laptop, I recently installed miniconda3. No problems this far, but after creating an environment with python 2.7 I get the following message everytime I open a terminal:...
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will sudo apt-get upgrade destroy my python 2 environment?

I am a newbie to Ubuntu. I have just installed conda with python3 and python2 environments. I also see people say "sudo apt-get upgrade" will upgrade all packages installed. My concern is that will it ...
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1 answer
2k views

How to activate conda environments while still being able to change the environment with eval --setenvironment

I have a working environment in which I need to often change from one python conda environment to other environments provided by colleagues to run code. In order to have the conda environments active ...
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1 vote
1 answer
892 views

How to fix Conda "missing path to environment variable"?

I have a conda environment named tensorflow_p36. When I run import mujoco-py I get the following error: Exception: Missing path to your environment variable. Please add following line to ....
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1 answer
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Conda channel for python3.8

I've download python3.8 following the instructions at Developing With Python 3.8 on Ubuntu 18.04 LTS. Running python3.8 in the terminal works fine. The thing is, when I try to make a channel that ...
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1 answer
8k views

Getting Import error after installing packages through conda

I just installed pandas, BeautifulSoup4, Jinja2 alongside conda distribution, but I'm not able to import any of the packages except numpy and others which come pre-installed with conda. Where am I ...
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10 votes
4 answers
26k views

conda activate not working in a bash file

I am trying to write a script with the name myscrpt.sh, so when I run it it automatically creates a virtual env and activate it using conda. My conda version is 4.7.1. This is what I have at the ...
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Force R to read folders outside of conda environment to install packages

I am using R in RStudio outside of a conda environment (I have miniconda3 installed to operate QIIME2). However, when I try installing R packages, I am always getting errors as R is always looking in ...
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663 views

Can't use PyTorch in PyCharm

I installed PyTorch via Anaconda and changed the Project interpreter to Conda Environment in the settings in PyCharm. Even though I can request the PyTorch version in the console with import torch ...
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2 votes
3 answers
5k views

Anaconda Nav wont launch 18.04

I type in anaconda-navigator but i get this "anaconda-navigator: command not found" I have conda update conda.
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2 votes
0 answers
6k views

What's the command to find out version of gcc is used inside a conda virtual environment?

I have a program to be compiled in which I need to have gcc. However, when a python 2.7 virtual conda enviornment being installed, it needs gcc. So I believe I don't have to install gcc package ...
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1 answer
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How to get miniconda2 installation file from the miniconda website using a bash script?

I'd like to write a bash script which automatically downloads the miniconda installation script in Linux-x86_64 for python2.7. Apparently I have to go to the website and manually download the ...
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2 votes
0 answers
296 views

Getting rid of conda environment's name when using powerline?

I have been using powerline in Vim for a while. Today I tried it also in my Ubuntu shell (Gnome terminal) and it mostly works well, with one caveat: it annoyingly displays the name of the currently ...
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3 votes
2 answers
10k views

Why does “(base)” appear in front of my terminal prompt II?

I have conda with two environments working, I have installed "conda_nb" and since I did it, the word "(base)" appears always in my prompt, I discovered that I can remove for a session using conda ...
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2 votes
1 answer
2k views

let `conda install` use a manually pre-downloaded package

I've got a PC with a slow internet connection. When trying to install an about 500MB package (conda install -c pytorch pytorch), I get a download timeout. I tried downloading this file manually ...
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1 vote
1 answer
6k views

Solving environment: failed

I want to install Tensorflow-GPU for Anaconda Python 3.6. How can I fix this? $ conda install -c anaconda tensorflow-gpu Solving environment: failed # >>>>>>>>>>>&...
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0 votes
2 answers
1k views

Conda package installs in wrong environment

I am trying to install torch using conda however, it installs it into another conda environment not the one I am interested in. How can I fix this? [jalal@goku NAACL2018]$ conda install pytorch ...
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