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My /etc/apt directory was removed. I am using Ubuntu 16.10. How can I rebuild that directory?

Now apt command gives this error:

W: Unable to read /etc/apt/apt.conf.d/ - DirectoryExists (2: No such file or directory)
W: Unable to read /etc/apt/sources.list.d/ - DirectoryExists (2: No such file or directory)
W: Unable to read /etc/apt/sources.list - RealFileExists (2: No such file or directory)
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