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I installed Ubuntu 16.04.2 from ubuntu-16.04.2-server-amd64.iso. It was working fine. But once I deployed all the patches, it started waiting for ten minutes after the step "Stopped LVM2 metadata daemon" during shutdown.

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I had the same problem a couple of days ago. What I did to work out this issue was quite simple. Just edit the /usr/share/unattended-upgrades/unattended-upgrade-shutdown file at the line 120 this way:

Before: if apt_pkg.config.find_b("Unattended-Upgrade::InstallOnShutdown", False)

After: if apt_pkg.config.find_b("Unattended-Upgrade::InstallOnShutdown", false)

I hope it works for you too.

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