1

I've made a mistake by:

"sudo rm -rf /usr/share/java"

Now, every check version by

"java -version"

the output messages is:

"Picked up JAVA_TOOL_OPTIONS: -javaagent:/usr/share/java/jayatanaag.jar

Error opening zip file or JAR manifest missing : /usr/share/java/jayatanaag.jar

Error occurred during initialization of VM agent library failed to init: instrument"

My question:

How can I solve it for check java -version?

Update (1): by apply "sudo apt-get install --reinstall oracle-java6-installer", the output:

:~$ sudo apt-get install --reinstall oracle-java6-installer

[sudo] password for evergreen:

Reading package lists... Done Building dependency tree
Reading state information... Done 0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 1 not upgraded. Need to get 0 B/21.0 kB of archives. After this operation, 0 B of additional disk space will be used. Preconfiguring packages ... (Reading database ... 256954 files and directories currently installed.)

Preparing to unpack .../oracle-java6-installer_6u45-0~webupd8~8_all.deb ... oracle-license-v1-1 license has already been accepted Unpacking oracle-java6-installer (6u45-0~webupd8~8) over (6u45-0~webupd8~8) ... Processing triggers for gnome-menus (3.10.1-0ubuntu5) ... Processing triggers for desktop-file-utils (0.22-1ubuntu3) ... Processing triggers for bamfdaemon (0.5.1+15.04.20150202-0ubuntu1) ... Rebuilding /usr/share/applications/bamf-2.index... Processing triggers for mime-support (3.58ubuntu1) ... Processing triggers for shared-mime-info (1.3-1) ... Unknown media type in type 'all/all' Unknown media type in type 'all/allfiles' Setting up oracle-java6-installer (6u45-0~webupd8~8) ... Installing from local file /var/cache/oracle-jdk6-installer/jdk-6u45-linux-x64.bin Removing outdated cached downloads... Unpacking... Checksumming... Extracting... UnZipSFX 5.50 of 17 February 2002, by Info-ZIP (Zip-Bugs@lists.wku.edu). creating: jdk1.6.0_45/ creating: jdk1.6.0_45/db/ creating: jdk1.6.0_45/db/bin/ inflating: jdk1.6.0_45/db/bin/ij
.....................................................................................................................................................
Creating jdk1.6.0_45/jre/lib/deploy.jar

Done. ......................................................................................................................................

update-alternatives: using /usr/lib/jvm/java-6-oracle/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode

update-binfmts: warning: current package is oracle-java6, but binary format already installed by openjdk-7

Oracle JDK 6 installed Oracle JRE 6 browser plugin installed

xxxxx@xxx:~$ java -version

Picked up JAVA_TOOL_OPTIONS: -javaagent:/usr/share/java/jayatanaag.jar

Error opening zip file or JAR manifest missing : /usr/share/java/jayatanaag.jar

Error occurred during initialization of VM agent library failed to init: instrument

Improve this question
2
  • 1
    What about reinstalling java with apt-get install --reinstall PACKAGENAME? What Java did you use? Oracle or OpenJDK?
    – Byte Commander ♦
    May 19, 2015 at 19:10
  • sudo apt-get install --reinstall oracle-java6-installer: as above update, no difference. I'm noticed with the message: "update-binfmts: warning: current package is oracle-java6, but binary format already installed by openjdk-7", may this is the core, but don't know how to solve. I'm using the "oracle-java6-installer".
    – evergreen
    May 20, 2015 at 3:29

2 Answers 2

Reset to default
2

Start a search for all packages for the path /usr/share/java in the standard language (English):

LANG=C apt-file search  /usr/share/java/ | awk -F": " '{print $1}' | sort -u | xargs apt-cache policy | grep -P -B 1 "Installed:\s[^(]"

With this command, you see a list of installed packages. Install these packages again with:

sudo apt-get install --reinstall <package_name>

Sample output:

% LANG=C apt-file search  /usr/share/java/ | awk -F": " '{print $1}' | sort -u | xargs apt-cache policy | grep -P -B 1 "Installed:\s[^(]"

gettext:
  Installed: 0.19.2-2ubuntu1
--
gettext-base:
  Installed: 0.19.2-2ubuntu1
--
java-common:
  Installed: 0.52
--
libatk-wrapper-java:
  Installed: 0.30.5-1
--
libcommons-collections3-java:
  Installed: 3.2.1-8
--
libcommons-dbcp-java:
  Installed: 1.4-5ubuntu1
--
libcommons-pool-java:
  Installed: 1.6-2
--
libecj-java:
  Installed: 3.10.1-1
--
libservlet3.0-java:
  Installed: 7.0.56-2
--
libtomcat7-java:
  Installed: 7.0.56-2
--
ure:
  Installed: 4.4.2-0ubuntu1
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4
  • Super: for errors of missing is solved, as my update(2) above. My quest No.2 is still staying, could we also treat it?
    – evergreen
    May 20, 2015 at 7:22
  • This problem is a completely different and stands in no connection with the deletion of the files. Please be fair and create for this problem, a new question. I'll just watch this question then. :)
    – A.B.
    May 20, 2015 at 7:29
  • Agree!, I'm going to create new topic, will be updated.
    – evergreen
    May 20, 2015 at 8:14
  • A.B: my new topic is in: "Picked up JAVA_TOOL_OPTIONS: -javaagent:/usr/share/java/jayatanaag.jar"
    – evergreen
    May 20, 2015 at 8:24
0

Had this problem. I solved it by installing libc6-dev-amd64.

sudo apt-get install libc6-dev-amd64

If still doesn't work, try to launch the installer in root mode:

sudo ./install
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