I am looking for any way to put some comments on the pdf which I open that by the the evince . Is there any way to that?
On newer versions of Evince (a.k.a Document Viewer) you can edit annotations by pressing the pencil button on top left of the app window (tested on Evince 3.30.2).
On the left sidebar, where Thumbnails is usually shown, click on Thumbnails and select Annotations. Then, go to Add under Annotations there is small edit button. Click on that one and you can add comments on your pdf.
Alternatively, you can use Okular which may offer more options.