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I have folders naming ouput00035023031 to output000035023035. I have written the bash script to iterate through each folder and enter the folder. After entering the folder I want to run a program 'barycorr'. Which asks for three inputs. The inputs are filenames *cl.evt. The code is blelow :

for i in $(seq -f "%03g" 1 5); do
    cd output0003502303$i
    echo -e "sw00092413002xpcw3po_cl.evt 
    sw00092413002xpcw3po_cl_bary4.evt 
    sw00092413002sao.fits.gz" | barycorr ra=253.467570 dec=39.760169
    cd ..
done

I need to give first input the filenames sw*pcw3po_cl.evt, secondly the filename I want to save like sw*xpcw3po_cl_bary4.evt and third the path where sw*sao.fits.gz file is located. The * changes according to which folder I am in. How to write the script now to run this program inside the each folder.

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  • Will there always be exactly one match to each of those patterns in each folder? That is, is it possible a folder might have sw1pcw3po_cl.evt and also sw2pcw3po_cl.evt? Jun 18, 2021 at 9:40
  • Yes, the sw00035023032xpcw3po_cl.evt changes according to output folder number like output00035023032 and aloing with this there might be file name sw00035023032xwtw2po_cl.evt i.e pcw3 may changed to 'wtw2'.
    – unicorn
    Jun 18, 2021 at 10:03
  • Is the first part always the same as the folder name? That is, are the files <foldername>xpcw3po_cl.evt, <foldername>xpcw3po_cl_bary4.evt, and <foldername>sao.fits.gz? Also, is it really necessary to cd into the folders, or would it work to pass paths (e.g. <foldername>/<foldername>xpcw3po_cl.evt) to the barycorr command? (The reason for the second question is that cd in scripts tends to be confusing, and can cause chain-reaction failures, so I prefer to avoid them.) Jun 18, 2021 at 10:17
  • Yes, we can give path . We can make list of this command by changing the numerical value only like 00035023030' to '00035023035'. : echo -e "/home/dinesh/Test/output00035023030/sw00035023030xwtw2po_cl.evt /home/dinesh/Test/output00035023030/sw00035023030xwtw2po_cl_bary.evt /home/dinesh/Test/00035023030/auxil/sw00035023030sao.fits.gz" | barycorr ra=253.467570 dec=39.760169 ` . but if one number is missed like say ..31 then it program throws error. I need to bypass the error too.
    – unicorn
    Jun 18, 2021 at 10:25

1 Answer 1

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If I understand right, you should be able to do something like this:

for i in $(seq -f "%03g" 1 5); do
    printf '%s\n' "output0003502303${i}/sw00092413${i}"{xpcw3po_cl.evt,xpcw3po_cl_bary4.evt,sao.fits.gz} |
        barycorr ra=253.467570 dec=39.760169
done

Explanation: the printf '%s\n' will print each of the following arguments (the %s part) followed by newlines (the \n) -- that is, each on a separate line. printf is much more controllable for things like this than echo.

As for those arguments, each one consists of the folder name and filename prefixes, and then the {xpcw3po_cl.evt,xpcw3po_cl_bary4.evt,sao.fits.gz} part expands to each of those suffixes. Essentially, it's a shorthand for:

"output0003502303${i}/sw00092413${i}"xpcw3po_cl.evt
"output0003502303${i}/sw00092413${i}"xpcw3po_cl_bary4.evt
"output0003502303${i}/sw00092413${i}"sao.fits.gz

Is this what's needed? If not, please clarify.

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