List and remove unofficially installed CA certificates

Question

This article expose how around 18% of HTTPS connections are being detected as intercepted by MITM proxies. As the great related paper states:

To circumvent this validation, local software injects a self-signed CA certificate into the client browser’s root store at install time.
[...]
Contrary to widespread belief, public key pinning [19]— an HTTPS feature that allows websites to restrict connections to a specific key— does not prevent this interception. Chrome, Firefox, and Safari only enforce pinned keys when a certificate chain terminates in an authority shipped with the browser or operating system. The extra validation is skipped when the chain terminates in a locally installed root (i.e., a CA certificate installed by an administrator) [34].

Is pretty common on companies, desktop antivirus and malware/adware to add a root CA. Sometimes even with honest reasons. But to make the situation more clear: SSL web browsing is exactly as strong as the weakest CA (this includes DNS, if DNS-over-HTTPS).

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I want to check if my HTTPS traffic is intercepted at least in three aspects (better if just with CLI):

• Google Chrome/Chromium
• Firefox (Red Hat equivalent?)
• Ubuntu official repos/Snap (See ca-certificates & ca-cacert. Red Hat equivalent?)

So the real questions are:

• How to list unofficially installed CA certificates (doesn't come with Ubuntu/Firefox/Chrome) to avoid MITM attacks/HTTPS interception?
• How to reset trusted certificates stores to its default?

Some research and related questions

• checkmyhttps seems old and not trustworthy

• Chrome: chrome://settings/certificates.
  This is a subset of what return some of these commands?

  # System wide (I)
  awk -v cmd='openssl x509 -noout -subject' '/BEGIN/{close(cmd)};{print | cmd}' < /etc/ssl/certs/ca-certificates.crt
  
  # System wide (II) (`p11-kit` package)
  trust list
  

• Firefox

  certutil -L -d ~/.mozilla/firefox/*.default*/
  

• I already sudo update-ca-certificates -v -f. This just updates without removing any sneaky already installed certificate?

Reference

• Chromium - Root Certificate Policy
• Firefox: How to audit & reset the list of trusted servers/CAs
• How can I protect myself against software installing insecure root certificates?
• Who your browser trusts, and how to control it
• All root certificates that Firefox trusts for SSL/TLS (from)

Answer 1

dpkg -S somefile will tell you what package somefile belongs to. You can use dpkg --verify pkgname or debsums to see if they have been modified.

You can use those to verify /etc/ca-certificates.conf and the directories it refers to -- basically, verify that CA files belong ca-certificates + dpkg-reconfigure -plow ca-certificates to chose among them. As you may have guessed, update-ca-certificates uses this data to recreate the global CA store files.

I don't have an easy answer for app-specific stores like Chrome's and Firefox's. You'd basically start by looking for global configuration directories, if any (dpkg -L), and then look into each user profile to see if custom CAs have been installed in that profile: look at the files, diff with a new one, check if the account is corporate-managed, ... StackOverflow or SuperUser can help more directly.

Obligatory note: installing packages from untrusted third parties can mess up the system in many ways (running any untrusted script, really). I think yours is still a fair question, since benign software sometimes adds a CA and won't try to hide the fact. However, if you suspect someone might have modified your system behind your back, it's far safer to reinstall.