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How can I get multiple SYBA SI-PEX40057 (Marvell 88SE9230-based) SATA cards to play nice?

I've built a storage server using: Supermicro X9SCM-F motherboard Three Syba SI-PEX40057 PCIe SATA cards Ubuntu Server 12.04 LTS All twelve ports on the cards are populated with storage drives, as ...