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I've installed Ubuntu 14.04.3 on my notebook. I had selected three partitions for Ubuntu root (/), Swap and EFI. Other seven partitions were selected as "do not use this partition". After installing Ubuntu, I need to change the size of those seven partitions. I deleted them and created seven new partitions with disks (GNOME Disks). Will it make any affect on my Ubuntu installation?

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No, it won't affect your ubuntu installation.

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