I've spend the entire day on this problem, probably because I'm relatively new to Ubuntu.
I installed Windows 8.1 after Ubuntu. First I wasn't able to start Ubuntu, but after Bootrepair I was. Unfortunately I just changed the problem, since now I'm not able to boot Windows. The following link is of the Bootrepair report: http://paste.ubuntu.com/10971525/ .
Windows 8 is not installed on the first hd and according to some that is a problem, see: http://www.gnu.org/software/grub/manual/grub.html#DOS_002fWindows . It say's something about disk swapping. Should I try that or is there a different solution?