Ive installed ubuntu-32bit on windows7-32bit with wubi. Before that I had only ubuntu on my hard disk. It seems like my "home"-folder is the same as my windows home folder. Do I put config files in there? It seems like the directory structure is different than I had before when I only had ubuntu OS on my hard disk. Thanks for advice!
I don't fully understand your question, so I'm afraid my answer will include a bit of irrelevant information.
When you use Wubu, Ubuntu resides in a disk image, which lives as a single file on your Windows partition (
When you've actually booted into Ubuntu, you can access the Windows filesystem at
I haven't played with a Wubi system in a long while, but I find it easy to believe that Wubi creates a symbolic link (or a few) from your Ubuntu home directory to your Windows home folder. I don't think the entire home directory will be shared -- Ubuntu and Windows use different filesystems that support different features, have different filename restrictions, etc -- but I suppose the Desktop folder might be.