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After doing a fresh install of Ubuntu 14.04, Magnet links sometimes do not open Transmission, Its my only torrent client and i need to restart mt computer to get it working.

How can i fix this? Im using CHROME

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Which browser are you using? – Parto Apr 28 '14 at 15:13
In Firefox? - Goto Preferences > Applications and define what to do when clicking on a magnet-link. – mcantsin Apr 28 '14 at 15:22
im using CHROME – psychok7 Apr 28 '14 at 20:09

There is a bug report about this on launchpad:

Solution mentioned there: click on the "choose" button and go to /usr/bin and select transmission as startup application.

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