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This affects all of my usb ports, back, front.

The machine is still working fine. I can ssh into it from a different machine it just wont' take any input from my USB device.

I could use the computer for hours with no problems and other times it would die every 10 minutes.

here's the last tidbit of dmesg after my ports died. I tried keeping a minimal number of devices connected, but I need at the very least mouse, keyboard, wifi, and speakers plugin. It still dies. Any suggestions on how to debug this?

I'm looking for hints on what to try as much as solutions.

[    6.838793] type=1400 audit(1380292400.536:8): apparmor="STATUS" operation="profile_load" name="/usr/bin/quasselcore" pid=1571 comm="apparmor_parser"
[    6.838892] type=1400 audit(1380292400.536:9): apparmor="STATUS" operation="profile_load" name="/usr/lib/lightdm/lightdm/lightdm-guest-session-wrapper" pid=1565 comm="apparmor_parser"
[    6.839066] type=1400 audit(1380292400.536:10): apparmor="STATUS" operation="profile_load" name="/usr/lib/lightdm/lightdm/lightdm-guest-session-wrapper//chromium_browser" pid=1565 comm="apparmor_parser"
[    6.839171] type=1400 audit(1380292400.536:11): apparmor="STATUS" operation="profile_load" name="/usr/lib/x86_64-linux-gnu/lightdm-remote-session-freerdp/freerdp-session-wrapper" pid=1566 comm="apparmor_parser"
[    6.839176] type=1400 audit(1380292400.536:12): apparmor="STATUS" operation="profile_load" name="/usr/lib/x86_64-linux-gnu/lightdm-remote-session-uccsconfigure/uccsconfigure-session-wrapper" pid=1567 comm="apparmor_parser"
[    6.839445] type=1400 audit(1380292400.536:13): apparmor="STATUS" operation="profile_load" name="/usr/lib/x86_64-linux-gnu/lightdm-remote-session-freerdp/freerdp-session-wrapper//chromium_browser" pid=1566 comm="apparmor_parser"
[    6.839449] type=1400 audit(1380292400.536:14): apparmor="STATUS" operation="profile_load" name="/usr/lib/x86_64-linux-gnu/lightdm-remote-session-uccsconfigure/uccsconfigure-session-wrapper//chromium_browser" pid=1567 comm="apparmor_parser"
[    6.840039] type=1400 audit(1380292400.540:15): apparmor="STATUS" operation="profile_load" name="/usr/lib/cups/backend/cups-pdf" pid=1573 comm="apparmor_parser"
[    6.840368] type=1400 audit(1380292400.540:16): apparmor="STATUS" operation="profile_load" name="/usr/sbin/cupsd" pid=1573 comm="apparmor_parser"
[    6.840586] type=1400 audit(1380292400.540:17): apparmor="STATUS" operation="profile_load" name="/usr/sbin/mysqld" pid=1574 comm="apparmor_parser"
[    6.939828] init: avahi-cups-reload main process (1665) terminated with status 1
[    6.951484] ppdev: user-space parallel port driver
[    7.000570] IPv6: ADDRCONF(NETDEV_UP): eth1: link is not ready
[    7.000869] IPv6: ADDRCONF(NETDEV_UP): eth1: link is not ready
[    7.148290] e1000e 0000:00:19.0: irq 80 for MSI/MSI-X
[    7.252075] e1000e 0000:00:19.0: irq 80 for MSI/MSI-X
[    7.252161] IPv6: ADDRCONF(NETDEV_UP): eth0: link is not ready
[    7.252434] IPv6: ADDRCONF(NETDEV_UP): eth0: link is not ready
[    7.809759] IPv6: ADDRCONF(NETDEV_UP): wlan1: link is not ready
[    7.810039] IPv6: ADDRCONF(NETDEV_UP): wlan1: link is not ready
[    7.810704] IPv6: ADDRCONF(NETDEV_UP): wlan1: link is not ready
[   10.159150] IPv6: ADDRCONF(NETDEV_CHANGE): wlan1: link becomes ready
[   15.127430] vboxdrv: Found 8 processor cores.
[   15.127505] vboxdrv: fAsync=1 offMin=0x14998cbdb offMax=0x14998cbdb
[   15.127582] vboxdrv: TSC mode is 'asynchronous', kernel timer mode is 'normal'.
[   15.127584] vboxdrv: Successfully loaded version 4.2.18 (interface 0x001a0005).
[   15.333699] vboxpci: IOMMU not found (not registered)
[  467.137799] input: Logitech Unifying Device. Wireless PID:2010 as /devices/pci0000:00/0000:00:1c.3/0000:08:00.0/usb5/5-1/5-1.1/5-1.1:1.2/0003:046D:C52B.0003/input/input16
[  467.138086] logitech-djdevice 0003:046D:C52B.0006: input,hidraw3: USB HID v1.11 Keyboard [Logitech Unifying Device. Wireless PID:2010] on usb-0000:08:00.0-1.1:1
[  474.992393] audit_printk_skb: 54 callbacks suppressed
[  474.992396] type=1400 audit(1380292868.690:36): apparmor="DENIED" operation="open" parent=3779 profile="/usr/lib/telepathy/mission-control-5" name="/media/data/raidhome/.config/libaccounts-glib/accounts.db" pid=3780 comm="mission-control" requested_mask="rwc" denied_mask="rwc" fsuid=1000 ouid=1000
[  474.992403] type=1400 audit(1380292868.690:37): apparmor="DENIED" operation="open" parent=3779 profile="/usr/lib/telepathy/mission-control-5" name="/media/data/raidhome/.config/libaccounts-glib/accounts.db" pid=3780 comm="mission-control" requested_mask="r" denied_mask="r" fsuid=1000 ouid=1000
[  475.072376] type=1400 audit(1380292868.770:38): apparmor="DENIED" operation="open" parent=3779 profile="/usr/lib/telepathy/mission-control-5" name="/media/data/raidhome/.mission-control/accounts/accounts.cfg" pid=3780 comm="mission-control" requested_mask="r" denied_mask="r" fsuid=1000 ouid=1000
[  475.072471] type=1400 audit(1380292868.770:39): apparmor="DENIED" operation="mkdir" parent=3779 profile="/usr/lib/telepathy/mission-control-5" name="/media/data/raidhome/.local/share/telepathy/" pid=3780 comm="mission-control" requested_mask="c" denied_mask="c" fsuid=1000 ouid=1000
[  475.073462] mission-control[3780]: segfault at 40 ip 00007f5a9b2c5af0 sp 00007fff87f08260 error 4 in libgobject-2.0.so.0.3600.0[7f5a9b2af000+4d000]
[  475.929861] type=1400 audit(1380292869.626:40): apparmor="DENIED" operation="open" parent=3821 profile="/usr/lib/telepathy/mission-control-5" name="/media/data/raidhome/.config/libaccounts-glib/accounts.db" pid=3822 comm="mission-control" requested_mask="rwc" denied_mask="rwc" fsuid=1000 ouid=1000
[  475.929873] type=1400 audit(1380292869.626:41): apparmor="DENIED" operation="open" parent=3821 profile="/usr/lib/telepathy/mission-control-5" name="/media/data/raidhome/.config/libaccounts-glib/accounts.db" pid=3822 comm="mission-control" requested_mask="r" denied_mask="r" fsuid=1000 ouid=1000
[  475.930227] type=1400 audit(1380292869.626:42): apparmor="DENIED" operation="open" parent=3821 profile="/usr/lib/telepathy/mission-control-5" name="/media/data/raidhome/.mission-control/accounts/accounts.cfg" pid=3822 comm="mission-control" requested_mask="r" denied_mask="r" fsuid=1000 ouid=1000
[  475.930285] type=1400 audit(1380292869.626:43): apparmor="DENIED" operation="mkdir" parent=3821 profile="/usr/lib/telepathy/mission-control-5" name="/media/data/raidhome/.local/share/telepathy/" pid=3822 comm="mission-control" requested_mask="c" denied_mask="c" fsuid=1000 ouid=1000
[  475.932277] mission-control[3822]: segfault at 40 ip 00007f1eb0ef3af0 sp 00007fff10aded00 error 4 in libgobject-2.0.so.0.3600.0[7f1eb0edd000+4d000]
[  488.567141] init: plymouth-stop pre-start process (3893) terminated with status 1
[  559.356038] timeout: still 3 active urbs on EP #2
[  560.356031] timeout: still 3 active urbs on EP #2
[  561.356036] timeout: still 3 active urbs on EP #2
[  563.360024] xhci_hcd 0000:08:00.0: xHCI host not responding to stop endpoint command.
[  563.360030] xhci_hcd 0000:08:00.0: Assuming host is dying, halting host.
[  563.360067] xhci_hcd 0000:08:00.0: HC died; cleaning up
[  563.360094] usb 5-1: USB disconnect, device number 2
[  563.360101] usb 5-1.1: USB disconnect, device number 3
[  566.356052] xhci_hcd 0000:08:00.0: Timeout while waiting for configure endpoint command
[  566.356059] xhci_hcd 0000:08:00.0: Abort the command ring, but the xHCI is dead.
[  566.356066] usb 5-1.4.3: Not enough bandwidth for altsetting 0
[  566.372698] usb 5-1.2: USB disconnect, device number 4
[  566.384510] usb 5-1.4: USB disconnect, device number 5
[  566.384520] usb 5-1.4.3: USB disconnect, device number 6
[  566.397554] usb 6-1: USB disconnect, device number 2
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