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You can add scripts for clicking on files/folders by placing them in the ~/.local/share/nautilus/scripts/ directory. But the old way of placing right-click scripts in ~/.gnome2/nautilus-scripts that would work when you right clicked anywhere in the nautilus window no longer works.

This was also an unanswered question in a comment here

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you may have more luck with Nautilus Actions:… – Takkat May 7 '13 at 6:19

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