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I've noticed that on my home Ubuntu server one drive is read only for some reason. Digging up I found that this can happen when hard drives have errors. I used badblocks to check for errors, and indeed I have some damaged sectors.

In most cases the only rational course of action is to try to backup data, remove the HDD and buy a new one. However, this server doesn't have anything I already don't have backed up on multiple places, and I'd like to use it till it dies. I use it for streaming music and running some simple scripts. In any case, it would be a big fuss reinstalling everything.

Is there a way to mark these bad blocks without formatting a hdd?

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1 Answer 1

I assume you are talking about physical bad blocks on a disk and not about corrupted file systems.

To check the physical condition of your disk it's best to install smartmontools

sudo apt-get install smartmontools

This works because all modern disks log their health status using a system called S.M.A.R.T.

Use the smartctrl command to read out this status. For example to read all attributes from the first disk call

sudo smartctl --all /dev/sda

Watch out for a line talking about the overall heath status. Once this indicates an error it's very likely that the disk will fail soon.

SMART overall-health self-assessment test result: PASSED

Other lines you want to check for are the Pending Sector Count and the Reallocated Sectors.

ID# ATTRIBUTE_NAME          FLAG     VALUE WORST THRESH TYPE      UPDATED  WHEN_FAILED RAW_VALUE
  5 Reallocated_Sector_Ct   0x0033   100   100   036    Pre-fail  Always       -       48
197 Current_Pending_Sector  0x0012   100   100   000    Old_age   Always       -       2

Reallocated lists usually in the raw field the number of bad sectors the disk exchanged for working spare ones. Pending are sectors which might be reallocated in case the next write fails.

You can even trigger self tests of the disk when supported by your model sudo smartctl -t long /dev/sda

To fore checking of all sectors use badblocks in a mode in which data is written. Beware that even in general it's safe to call it will put extra load on your disks which might cause them to fail. Always have a backup of your data.

sudo badblocks -svvn -c 262144 /dev/sda

If you have fully processed your disk this way the disk controller should have replaced all bad blocks by working ones and the reallocated count will be increased in the SMART log.

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