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If I use the tool on the hard drive where windows is installed will it damage the windows OS or will it create a new partition ?

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using WINE will not affect windows. What is it you are doing exactly ? – bodhi.zazen Feb 19 '13 at 19:52
He probably means "wubi". – jdthood Feb 19 '13 at 20:06

Wine is a Linux application totally independent from Windows. It won't affect Windows at all.

If on the other hand you're talking of WUBI, this is a Windows program that installs Ubuntu like any other Windows program and it can be installed and uninstalled like other Windows programs.

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