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I've been trying to update my stuff on my machine, and it seems like it can't read my package list. It seems like every time i do the sudo apt-get install *something* && sudo apt-get update it gets stuck at reading package list, this have not been a problem before. Here is my specs and whatnot :

  • Memory : 15.8 gb
  • Processor : AMD Phenom(tm) II x4 965 Processor x 4
  • Graphics : Gallium 0.4 on AMD BARTS
  • OS type : 32-bit
  • Netspeed : enter image description here
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2  
Just clarifying... you are talking about executing sudo apt-get update, correct? –  Jack Feb 5 '13 at 23:31
2  
In Software Sources, see if selecting another server, instead of your current one, helps. –  user25656 Feb 6 '13 at 2:24
    
Sorry for not writing more about this problem. But here's the deal! everytime i run a sudo apt-get update, sudo apt-get upgrade or 'sodu apt-get install something' it will get to it eventually, but it takes along 30 minutes ti read thru the list. Ive tried changing server, and that didnt help. –  Dre Feb 6 '13 at 16:20
    
What's the specifications of your computer and your internet connection? Edit your question with new information don't add it in the comments... –  Alvar Feb 6 '13 at 16:21
    
btw, why do you have 32-bit on that specification? It makes no sense. I can't figure out your problem though, how many different servers have you tried? This answer might help, askubuntu.com/a/44900/10698 –  Alvar Feb 6 '13 at 16:53
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2 Answers

I've seen that as well.

I don't have a solution, but I have a workaround (echo 3 | sudo tee /proc/sys/vm/drop_caches) and potentially more information so someone can bring the investigation any further.

It's not a network issue because at "Reading package list...", it is just reading files in /var/lib/apt/lists/. A:

strace -tt -T -fo strace.log apt-get update

gives:

16394 14:43:03.921130 open("/var/lib/apt/lists/gb.archive.ubuntu.com_ubuntu_dists_precise_main_binary-i386_Packages", O_RDONLY|O_LARGEFILE) = 7 <0.000012>
[...]
16394 14:43:03.995238 read(6, "-3.1ubuntu2)\nConflicts: linux86\n"..., 32444) = 32444 <0.000111>
16394 14:43:05.787187 read(6, "c (<< 1:14.b.4-dfsg), erlang-exa"..., 32239) = 32239 <0.000069>
16394 14:43:05.788025 read(6, ".deb\nSize: 42130\nMD5sum: c7de671"..., 31695) = 31695 <0.000068>
16394 14:43:05.870734 read(6, "5: 29c4b395a92bdc12932f151c3643a"..., 31607) = 31607 <0.000071>
16394 14:43:05.890862 read(6, "e-pack-af-base\nFilename: pool/ma"..., 32538) = 32538 <0.000070>
16394 14:43:05.891425 read(6, "buntu-usb-live, ubuntu-dvd-live,"..., 32090) = 32090 <0.000066>
16394 14:43:05.891960 read(6, "cd9755b03ac2c9b8251125c7b6618\nDe"..., 32195) = 32195 <0.000034>
16394 14:43:06.043001 read(6, "rg>\nArchitecture: all\nVersion: 2"..., 32535) = 32535 <0.000072>

See how those 8 read system calls took over 2 seconds even though each individual call takes less than 1 ms. Running time apt-get update or looking at top, that process is not busy between those two calls. So why the delay?

Then I did:

echo t > /proc/sysrq-trigger

a few times and looked at the outcome in kern.log:

 apt-get         D 00000000     0 16790  12706 0x00000000
  e8695d30 00000086 f7bd5e6c 00000000 f7bd5e44 f74a6580 c1990e00 c1990e00
  efe46efe 000042cb f7b9de00 e71a7230 f74a6580 c107e116 00000000 00000000
  044aa200 00000000 00000000 00000000 00000000 e8695d0c e8695d0c c1038de8
 Call Trace:
  [<c107e116>] ? enqueue_entity+0x186/0x220
  [<c1038de8>] ? default_spin_lock_flags+0x8/0x10
  [<c15e13bd>] ? _raw_spin_lock_irqsave+0x2d/0x40
  [<c15e0533>] schedule+0x23/0x60
  [<c15deecf>] schedule_timeout+0x12f/0x290
  [<c1075c38>] ? ttwu_do_activate.constprop.86+0x58/0x70
  [<c1055190>] ? usleep_range+0x40/0x40
  [<c15e0846>] io_schedule_timeout+0x86/0xd0
  [<c15cef7d>] balance_dirty_pages.isra.17+0x3f5/0x4b4
  [<c15e118d>] ? _raw_spin_lock+0xd/0x10
  [<c1180781>] ? __set_page_dirty_buffers+0x81/0xb0
  [<c110deb5>] ? set_page_dirty+0x55/0x60
  [<c11812c9>] ? __block_page_mkwrite+0xe9/0x170
  [<c110f3ae>] balance_dirty_pages_ratelimited_nr+0xde/0x100
  [<c1126f53>] do_wp_page+0x503/0x830
  [<c1128ef7>] handle_pte_fault+0x267/0x2c0
  [<c1129c62>] handle_mm_fault+0x1e2/0x280
  [<c15e4988>] do_page_fault+0x158/0x4c0
  [<c104e4dc>] ? irq_exit+0x5c/0xa0
  [<c15e22d0>] ? do_debug+0x180/0x180
  [<c15e4830>] ? vmalloc_fault+0x195/0x195
  [<c15e1c53>] error_code+0x67/0x6c

So, not sure what that means but that looks about the handling of page faults, so points at a potential memory management issue.

I then tried a:

echo 3 >/proc/sys/vm/drop_caches

And that did make the problem go away.

Now, it very much looks like a kernel issue. So, I've updated to the latest kernel (3.8 backport from raring) and that's where I'm at. Will update if the problem persists with the newer kernel.

Edit

The problem does persist with the new kernel, though not as bad. And same thing,

echo 3 | sudo tee /proc/sys/vm/drop_caches

clears the problem for a while. I've only seen that happen on MSI laptops (Product Name: CR61 2M/CX61 2OC/CX61 2OD).

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On 5th of April, 2014 I can confirm that the problem still exists. Tested on: Linux Mint 16, 32 bit, running on 64 bit processor, Lenovo W520, and: Kubuntu 12.10 32 bit, again running on 64 bit hardware, custom built desktop. (and the solution/workaround suggested here also works :) ) –  fritzone Apr 5 at 19:13
    
@fritzone, I remember seeing the problem reported elsewhere where people were saying that switching to a 64bit OS fixed the problem. –  sch Apr 5 at 20:01
    
I plan to switch back to a 64 bit OS too. Before, on the desktop I had a 64 bit version of 12.10 and had no problems like this. –  fritzone Apr 5 at 20:02
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Follow the steps:

  • Clean out cache:

    sudo apt-get clean
    
  • Move the sources.list so apt cannot use it:

    mv /etc/apt/sources.list /etc/apt/sources.list1 && sudo apt-get update
    
  • Move it back then update:

    mv /etc/apt/sources.list1 /etc/apt/sources.list && sudo apt-get update 
    

Also check and remove any PPAs and source lines you don't need.

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