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I had ubuntu 11.10 and I installed Gromacs on it from Ubuntu software centre, but I installed Ubuntu 12.10 recently and I can't find the Gromacs simulation software in repository, any comments?

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there is a ubuntuUpdates packages in the following link which will solve your problem http://www.ubuntuupdates.org/package/core/quantal/universe/base/gromacs

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