Which file (name & path) store the settings made in this window?
The settings for the mouse shown in your screenshot can be accessed from the dconf-editor. If it is not installed you can install it by running: sudo apt-get install dconf-editor.
sudo apt-get install dconf-editor
Open dconf and navigate to: org -> gnome -> settings-daemon -> peripheral -> mouse. Here are some screenshots that show how each option relates to the settings.
org -> gnome -> settings-daemon -> peripheral -> mouse
You can also find the settings in gconf under gnome -> peripherals -> mouse. Here is a screenshot for gconf as well.
gnome -> peripherals -> mouse
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