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I remember that in old linux before closing system I had to manually unmount other partitions(ntfs/fat32). Do I have to do that in Ubuntu or is it magically umounted before shutdown by the system?

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No, all filesystems which reside in the /etc/fstab file, will be automatically unmounted before the system shuts down.

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No, you don't, all mounted partitions are unmounted before shutdown.

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