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Ok so far i have been using Ubuntu 12.04 without any problem, but one the mouse clicker just don't work when i select something. Now it works when i am opening up a program, but to lets say i want to open up the file manager. I got to right click then select open then hit enter to open it and that goes for any thing else i want to open, what i am asking is how can i restore its functionality.

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Try running the following command:

sudo apt-get install --reinstall xserver-xorg-input-mouse xserver-xorg-input-evdev-dev

Restart and test if it works.

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Worked fine for me. Brought up command prompt. Typed in code. Logged out (with the still working right click) and logged back in. All good

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