Printing prefix for certain app

Question

I use Java (with OpenJDK-7) based accounting app (FlexiBee) on Ubuntu 12.04 in my office and I need to be able to print B&W documents with duplex on my Canon printer. Unfortunately the app use its own print dialogue (the Java one I assume) so I cant set the B&W and duplex like in Evince for example. Is there a way how to set a prefix for certain app so every time I print from it the document will be B&W with duplex but it wont affect other apps? Or can I somehow disable the printing dialogue and use the default one instead?