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gnome-appearance-properties is no more available in Gnome3 and newer.

I want to change Background and Text colors of Windows, Input Boxes, Selected Items, etc. and customize Theme.

Is there any application available to do that?

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Please see this question. If you think, that question is sufficient you can flag it to close or delete the question (on certain situation). If you wanted something other than that question, please be specific about your question i.e What part of the themes you want to customize. thanks – Anwar Shah Aug 5 '12 at 17:29

You could try gtk-chtheme for basic selection of themes. I've also installed metacity-themes, shiki-colors and customised window buttons through gconf-editor under .../apps/metacity/.

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