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I want to customize the wubi installer and change the ubuntu name and logo from the installer as well as from the add/remove programs menu.

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This should tell you what you need to know: bazaar.launchpad.net/~ubuntu-installer/wubi/trunk/view/head:/… –  bcbc Mar 23 '12 at 19:56

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One of the easiest ways to do that is to use Remastersys. http://www.remastersys.com/ubuntu.html enter image description here

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