I just installed Docky on Xubuntu and for adding Home folder and Terminal to it, i opened these apps and clicked on their icons for "Pin to dock". Now, when i close them and then click on their respective icons on Docky, nothing happens. What can be done?
I add a similar problem with some java application. You can try to drop some applications' shortcut from /usr/share/applications to your dock. (If some applications are not in this folder you just need to create a new .desktop file).