To configure Your two monitors manually do:
sudo stop gdm
press:
Alt+Ctrl+F1
and log in. After that create xorg.conf file:
sudo Xorg -configure
The contents of the file should be written on the screen and the path to the created file should be written also (path depends on how You are logged, as super user or as Your user and just using sudo command)
Edit created xorg.conf.new (it is created instead of xorg.conf, but it is the same):
sudo gedit xorg.conf.new
You should find sections responsible for screen card and monitor. In my case these are:
Section "Monitor"
#DisplaySize 380 300
Identifier "Monitor0"
VendorName "AOC"
ModelName "919"
HorizSync 30.0 - 80.0
VertRefresh 55.0 - 75.0
Option "DPMS"
EndSection
Section "Device"
Identifier "Card0"
Driver "radeon"
VendorName "ATI Technologies Inc"
BoardName "Radeon 2100"
BusID "PCI:1:5:0"
EndSection
Section "Screen"
Identifier "Screen0"
Device "Card0"
Monitor "Monitor0"
SubSection "Display"
Viewport 0 0
Depth 1
EndSubSection
SubSection "Display"
Viewport 0 0
Depth 4
EndSubSection
SubSection "Display"
Viewport 0 0
Depth 8
EndSubSection
SubSection "Display"
Viewport 0 0
Depth 15
EndSubSection
SubSection "Display"
Viewport 0 0
Depth 16
EndSubSection
SubSection "Display"
Viewport 0 0
Depth 24
EndSubSection
EndSection
Copy Your monitor and screen sections and paste it somewhere in that file, and name (change Identifier) them Monitor1 and Screen1.
In Screen section corresponding to Screen1 change used monitor to Monitor1
Monitor "Monitor1"
reboot and then try to go to system->preferences->screen and detect monitors.
sudo nvidia-settingsyet? Might have to install nvidia-settings though. – user8290 Feb 12 '12 at 2:36